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Bilde av Fromm, Bastian
Bilde av Fromm, Bastian
Norgga árktalaš universitehtamusea bastian.fromm@uit.no

Bastian Fromm

  • Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan Beavan, Matthieu Muffato, Jieyu Shen et al.:
    Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
    Nature Ecology and Evolution 2024 DOI
  • Bastian Fromm, Thomas Sorger :
    Rapid adaptation of cellular metabolic rate to the MicroRNA complements of mammals and its relevance to the evolution of endothermy
    iScience 2024 DOI
  • Emilio Mármol-Sánchez, Bastian Fromm, Nikolay Oskolkov, Zoé Pochon, Panagiotis Kalogeropoulos, Eli Eriksson et al.:
    Historical RNA expression profiles from the extinct Tasmanian tiger
    Genome Research 2023 ARKIV / DOI
  • Ana E. Jenike, Katharine M. Jenike, Kevin J. Peterson, Bastian Fromm, Marc K. Halushka :
    Direct observation of the evolution of cell-type-specific microRNA expression signatures supports the hematopoietic origin model of endothelial cells
    Evolution & Development 2023 ARKIV / DOI
  • Sinan Ugur Umu, Vanessa Molin Paynter, Håvard Trondsen, Tilo Buschmann, Trine Ballestad Rounge, Kevin J. Peterson et al.:
    Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine
    Cell Genomics 2023 ARKIV / DOI
  • Eirik Høye, Vegar Johansen Dagenborg, Annette Torgunrud Kristensen, Christin Lund-Andersen, Åsmund Avdem Fretland, Susanne Lorenz et al.:
    T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases
    GigaScience 2023 ARKIV / DOI
  • Eirik Høye, Bastian Fromm, Paul H.M. Böttger, Diana Domanska, Annette Torgunrud Kristensen, Christin Lund-Andersen et al.:
    A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer
    NAR Cancer 2022 ARKIV / DOI
  • Grygoriy Zolotarov, Bastian Fromm, Ivano Legnini, Salah Ayoub, Gianluca Polese, Valeria Maselli et al.:
    MicroRNAs are deeply linked to the emergence of the complex octopus brain
    Science Advances 2022 ARKIV / DOI
  • Bastian Fromm, Xiangfu Zhong, Marcel Tarbier, Marc R. Friedländer, Michael Hackenberg :
    The limits of human microRNA annotation have been met
    RNA: A publication of the RNA Society 2022 DOI
  • Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno et al.:
    sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
    Nucleic Acids Research (NAR) 2022 ARKIV / DOI
  • Kevin Peterson, Alan Beavan, Peter J Chabot, Mark A McPeek, Davide Pisani, Bastian Fromm et al.:
    MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events
    Molecular Biology and Evolution (MBE) 2022 ARKIV / DOI
  • Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov et al.:
    MirGeneDB 2.1: toward a complete sampling of all major animal phyla
    Nucleic Acids Research (NAR) 2022 ARKIV / DOI
  • Wenjing Kang, Bastian Fromm, Anna J. Houben, Eirik Høye, Daniela Bezdan, Carme Arnan et al.:
    MapToCleave: High-throughput profiling of microRNA biogenesis in living cells
    Cell reports 2021 ARKIV / DOI
  • Rui-Si Hu, Xiao-Xuan Zhang, Qiao-Ni Ma, Hany M Elsheika, Muhammad Ehsan, Quan Zhao et al.:
    Differential expression of microRNAs and tRNA fragments mediate the adaptation of the liver fluke Fasciola gigantica to its intermediate snail and definitive mammalian hosts
    International Journal for Parasitology 2021 DOI
  • Umberto Rosani, Enrico Bortoletto, Chang-Ming Bai, Beatriz Novoa, Antonio Figueras, Paola Venier et al.:
    Digging into bivalve miRNAomes: between conservation and innovation
    Philosophical Transactions of the Royal Society of London. Biological Sciences 2021 DOI
  • Baoqing Chen, Mihnea Paul Dragomir, Linda Fabris, Recep Bayraktar, Erik Knutsen, Xu Liu et al.:
    The long noncoding RNA CCAT2 induces chromosomal instability through BOP1-AURKB signaling
    Gastroenterology 2020 ARKIV / DOI
  • Christin Lund-Andersen, Sigve Nakken, Ståle Nygård, Bastian Fromm, Lars Birger Aasheim, Ben Davidson et al.:
    Integrative genomic analysis of peritoneal malignant mesothelioma: Understanding a case with extraordinary chemotherapy response
    Cold Spring Harbor Molecular Case Studies 2019 FULLTEKST / ARKIV / DOI
  • Eline P. Hansen, Bastian Fromm, Sidsel D. Andersen, Antonio Marcilla, Kasper L. Andersen, Anne Borup et al.:
    Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk
    Journal of Extracellular Vesicles 2019 DOI
  • Bastian Fromm, Diana Ewa Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta et al.:
    MirGeneDB 2.0: the metazoan microRNA complement
    Nucleic Acids Research (NAR) 2019 ARKIV / DOI
  • Jon Bråte, Ralf Stefan Neumann, Bastian Fromm, Arthur Alexander Blørstad Haraldsen, James E. Tarver, Hiroshi Suga et al.:
    Unicellular origin of the animal microRNA machinery
    Current Biology 11. Oct 2018 DATA / ARKIV / DOI
  • Sinan Ugur Umu, Hilde Langseth, Cecilie Bucher-Johannessen, Bastian Fromm, Andreas Keller, Eckart Meese et al.:
    A comprehensive profile of circulating RNAs in human serum
    RNA Biology 2018 DOI
  • James E. Tarver, Richard S. Taylor, Mark N. Puttick, Graeme T. Lloyd, Walker Pett, Bastian Fromm et al.:
    Well-annotated microRNAomes do not evidence pervasive miRNA loss
    Genome Biology and Evolution (GBE) 2018 DOI
  • Vladimir Y. Ovchinnikov, Viatcheslav A Mordvinov, Bastian Fromm :
    Extreme conservation of miRNA complements in opisthorchiids
    Parasitology international 2017 DOI
  • Bernhard Egger, Lutz Bachmann, Bastian Fromm :
    Atp8 is in the ground pattern of flatworm mitochondrial genomes
    BMC Genomics 2017 ARKIV / FULLTEKST / DOI
  • Bastian Fromm, Vladimir Y. Ovchinnikov, Eirik Høye, Dolores Bernal, Michael Hackenberg, Antonio Marcilla :
    On the presence and immunoregulatory functions of extracellular microRNAs in the trematode Fasciola hepatica
    Parasite immunology (Print) 2017 DOI
  • Boris Simovski, Daniel Vodak, Sveinung Gundersen, Diana Ewa Domanska, Abdulrahman Azab, Lars Holden et al.:
    GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
    GigaScience 27. Apr 2017 ARKIV / FULLTEKST / DOI
  • Alex Graudenzi, Claudia Cava, Gloria Bertoli, Bastian Fromm, Kjersti Flatmark, Giancarlo Mauri et al.:
    Pathway-based classification of breast cancer subtypes
    Frontiers in Bioscience 2017
  • Guillem Ylla, Bastian Fromm, Maria-Dolors Piulachs, Xavier Belles :
    The microRNA toolkit of insects
    Scientific Reports 2016 DOI
  • Vilde Drageset Haakensen, Vegard Nygaard, Liliana Greger, Miriam Ragle Aure, Bastian Fromm, Ida Rashida Khan Bukholm et al.:
    Subtype-specific micro-RNA expression signatures in breast cancer progression
    International Journal of Cancer 2016 DOI
  • Lutz Bachmann, Bastian Fromm, Luciana Patella de Azambuja, Walter Boeger :
    The mitochondrial genome of the egg-laying flatworm Aglaiogyrodactylus forficulatus (Platyhelminthes: Monogenoidea)
    Parasites & Vectors 2016 DOI
  • João Ramalho-Carvalho, Bastian Fromm, Rui Henrique, Carmen Jerónimo :
    Deciphering the function of non-coding RNAs in prostate cancer
    Cancer Metastasis Review 2016 DOI
  • Kjersti Flatmark, Erik Ulvolden Høye, Bastian Fromm :
    microRNAs as cancer biomarkers
    Scandinavian Journal of Clinical and Laboratory Investigation 2016 DOI
  • Bastian Fromm, Tyler Billipp, Liam E. Peck, Morten Johansen, James E. Tarver, Benjamin L. King et al.:
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    Annual Review of Genetics 2015 DOI
  • Bastian Fromm, María Trelis, Michael Hackenberg, Fernando Cantalapiedra, Dolores Bernal, Antonio Marcilla :
    The revised microRNA complement of Fasciola hepatica reveals a plethora of overlooked microRNAs and evidence for enrichment of immuno-regulatory microRNAs in extracellular vesicles
    International Journal for Parasitology 2015 DOI
  • Bastian Fromm, Jutta Bachmann, Lutz Bachmann :
    In search for the genetic basis of ectoparasitism and endoparasitism of flatworms
    Biologie in unserer Zeit 2015 DOI
  • Christoph Hahn, Bastian Fromm, Lutz Bachmann :
    Comparative genomics of flatworms (Platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata
    Genome Biology and Evolution (GBE) 2014 DOI
  • Bastian Fromm, Susann Burow, Christoph Hahn, Lutz Bachmann :
    MicroRNA loci support conspecificity of Gyrodactylus salaris and G. thymalli (Platyhelminthes: Monogenea)
    International Journal for Parasitology 2014 DOI
  • Bastian Fromm, Merete Molton Worren, Christoph Hahn, Johannes Eivind Hovig, Lutz Bachmann :
    Substantial loss of conserved and gain of novel microRNA families in flatworms
    Molecular Biology and Evolution (MBE) 2013 DOI
  • Bastian Fromm, Philip David Harris, Lutz Bachmann :
    MicroRNA preparations from individual monogenean Gyrodactylus salaris – a comparison of six commercially available totalRNA extraction kits
    BMC Research Notes 2011 DOI
  • Bastian Fromm, Arun H. Patil, Marc K. Halushka :
    A Novel Circulating MicroRNA for the Detection of Acute Myocarditis
    New England Journal of Medicine 2022 DOI
  • Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta et al.:
    Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885)
    Nucleic Acids Research (NAR) 2020 DOI
  • Bastian Fromm, Wenjing Kang, Carlos Rovira, Alfonso Cayota, Kenneth W Witwer, Marc R. Friedländer et al.:
    Plant microRNAs in human sera are likely contaminants
    Journal of Nutritional Biochemistry 2019 DOI
  • Bastian Fromm, Juan Pablo Tosar, Yin Lu, Marc K. Halushka, Kenneth W. Witwer :
    Human and Cow Have Identical miR-21-5p and miR-30a-5p Sequences, Which Are Likely Unsuited to Study Dietary Uptake from Cow Milk
    Journal of Nutrition 2018 DOI
  • Marta Rodriguez, Cristina Bajo-Santos, Nina Pettersen Hessvik, Susanne Lorenz, Bastian Fromm, Viktor Berge et al.:
    Identification of non-invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes
    Molecular Cancer 2017 DOI
  • Arthur Alexander Blørstad Haraldsen, Jon Bråte, Ralf Stefan Neumann, Bastian Fromm, Paul Eivind Grini, Kamran Shalchian-Tabrizi :
    Pre-metazoan origin of animal microRNAs
    2016
  • Bastian Fromm, Jutta Bachmann, Lutz Bachmann :
    Tilpassninger i arvematerialet hos parasittiske flatormer
    Naturen 2015
  • Bastian Fromm, Jutta Bachmann, Lutz Bachmann :
    Auf der Suche nach der genetischen Basis von Ekto- und Endoparasitismus der Plattwürmer
    Biologie in unserer Zeit 2015
  • Bastian Fromm, Merete Molton Worren, Christoph Hahn, Johannes Eivind Hovig, Lutz Bachmann :
    Evolution of Parasitism in Flatworms Is Accompanied by Substantial Loss of Conserved microRNA Families and Increase of Novel microRNAs
    2013
  • Bastian Fromm, Thomas D. Otto, Christoph Hahn, Philip David Harris, Lutz Bachmann :
    MiRCandRef a local assembly algorithm for description of microRNAs in non-genome organisms
    2012
  • Christoph Hahn, Philip David Harris, Bastian Fromm, Tor A. Bakke, Lutz Bachmann :
    Genomic insights into the evolution of the economically important monogenean flatworm Gyrodactylus salaris
    2012

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